I fully removed the 2012 version & deleted the folder as I thought that would be the best way to proceed, I then installed 2013 & then the update, I have since removed & reinstalled several times & I have also downloaded the latest version with no change.
I have tried removing the entries individually but of those which do try I receive an error saying that it failed to edit the registry, I have now hidden those problem entries, I will continue to test the software to see if this also corrects the popup problem.
Update: As several users have mentioned running revo uninstaller pro I thought I'd try it but I get the error saying it failed to remove the entries for the first few then the program seems to freeze, I also now have a very slightly different popup message which appears after running registry cleaner & then clean & fix my computer.
I will include the new error message plus a screenshot of the task manager showing the MB usage when the popups appear.
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I have returned to hiding these entries so will see if the popup/s return.