Obviously your post refers to jv16 PowerTools 2006.
So, posting it under the heading "jv16 PowerTools 2005" is not the right way to proceed.
I notice you posted your problem also here.
Well in the future you'd better don't do that again, because posting twice at different forum subdivisons is prohibited by the forum rules you can find here, especially rule number 3 ( Posting the same (or almost the same) message to multiple boards is not allowed.).
Maybe the author himself (jv16) is able to give you the right explanation, but personally I don't think jv16PT2006 "doesn't like the fact StartRight pulls all the startup run-keys and programs from Windows control and does it all in the StartRight prog", as you wrote.
Hopefully jv16 can tell uou (and us) about it :