On Vista SP2 x64, it looks like the Wow6432Node's are not being scanned. No errors are being reported in these. For example, leftover from IE7 to IE8 conversion, the file ieuser.exe was detected as missing in HKLM and HKCR but not in HKCR\Wow6432Node. I haven't seen anything showing up as errors in the Wow6432Nodes in these new test versions.
Detected correctly:
@=hex(2),00,25,00,50,00,72,00,6f,00,67,00,72,00,61,00,6d,00,46,00,69,00,6c,\
00,65,00,73,00,25,00,5c,00,49,00,6e,00,74,00,65,00,72,00,6e,00,65,00,74,00,\
20,00,45,00,78,00,70,00,6c,00,6f,00,72,00,65,00,72,00,5c,00,49,00,45,00,55,\
00,73,00,65,00,72,00,2e,00,65,00,78,00,65,00,22,00,00,00,00,00
"ServerExecutable"=hex(2),00,50,00,72,00,6f,00,67,00,72,00,61,00,6d,00,46,\
00,69,00,6c,00,65,00,73,00,25,00,5c,00,49,00,6e,00,74,00,65,00,72,00,6e,00,\
65,00,74,00,20,00,45,00,78,00,70,00,6c,00,6f,00,72,00,65,00,72,00,5c,00,49,\
00,45,00,55,00,73,00,65,00,72,00,2e,00,65,00,78,00,65,00,00,00,00,00
and
@=hex(2),00,25,00,50,00,72,00,6f,00,67,00,72,00,61,00,6d,00,46,00,69,00,6c,\
00,65,00,73,00,25,00,5c,00,49,00,6e,00,74,00,65,00,72,00,6e,00,65,00,74,00,\
20,00,45,00,78,00,70,00,6c,00,6f,00,72,00,65,00,72,00,5c,00,49,00,45,00,55,\
00,73,00,65,00,72,00,2e,00,65,00,78,00,65,00,22,00,00,00,00,00
"ServerExecutable"=hex(2),00,50,00,72,00,6f,00,67,00,72,00,61,00,6d,00,46,\
00,69,00,6c,00,65,00,73,00,25,00,5c,00,49,00,6e,00,74,00,65,00,72,00,6e,00,\
65,00,74,00,20,00,45,00,78,00,70,00,6c,00,6f,00,72,00,65,00,72,00,5c,00,49,\
00,45,00,55,00,73,00,65,00,72,00,2e,00,65,00,78,00,65,00,00,00,00,00
Not detected at all
@=hex(2),00,25,00,50,00,72,00,6f,00,67,00,72,00,61,00,6d,00,46,00,69,00,6c,\
00,65,00,73,00,28,00,78,00,38,00,36,00,29,00,25,00,5c,00,49,00,6e,00,74,00,\
65,00,72,00,6e,00,65,00,74,00,20,00,45,00,78,00,70,00,6c,00,6f,00,72,00,65,\
00,72,00,5c,00,49,00,45,00,55,00,73,00,65,00,72,00,2e,00,65,00,78,00,65,00,\
22,00,00,00
"ServerExecutable"=hex(2),00,50,00,72,00,6f,00,67,00,72,00,61,00,6d,00,46,\
00,69,00,6c,00,65,00,73,00,28,00,78,00,38,00,36,00,29,00,25,00,5c,00,49,00,\
6e,00,74,00,65,00,72,00,6e,00,65,00,74,00,20,00,45,00,78,00,70,00,6c,00,6f,\
00,72,00,65,00,72,00,5c,00,49,00,45,00,55,00,73,00,65,00,72,00,2e,00,65,00,\
78,00,65,00,00,00